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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015942351.1_cds_XP_016485843.1_76732
CDS Infomation

[gene=LOC107806232] [db_xref=GeneID:107806232] [protein=putative indole-3-acetic acid-amido synthetase GH3.9 isoform X2] [protein_id=XP_016485843.1] [location=complement(join(967..1262,1823..2104,2694..3526,4423..4519,4799..4853))] [gbkey=CDS]
Sequence

ATGGAGAAGACTCTAATCTTATTTCTGCTCACCCCATCACTGAAATGCTTTGCAGGGACG
TCAGGTGGGGAGCCTAAGTTGATGCCTTCAATTGCTGAAGATCTCGACCGTCGAACGTTT
CTCTACAATCTCATCATGCCTATTATGAACCAGTATATACCAGGACTTGATGAAGGTAAA
GCCATGTTCCTCTACTTTGTCAAGGCAGAAATGTCTACACCTTGTGGCATACCAGCAAGG
ACAGTACTAACAAGTTACTACAAAAGCAAGCACTTTAAATGTCGATCAAAGGATCCTTAT
AACGATTTCACAAGCCCAGACCAAGCTATACTTTGTTATGACAGTAACCAAAGCATGTAT
TGCCAGTTACTAGCTGGACTTGTCTATCGCCACCAAGTCCTCCGAATTGGTGCCGTTTTC
GCCTCCGCCCTCCTCCGTGCCATCTCTTTCCTCCAACGTAATTGGCAAAATATGTGTCAT
GACATTCGAACGGGCCAATTAAATGCCATGATCACCGATGTTTCTTGTCGATCTTCCCTG
TCCAATATTCTTTCGACTTTAAACCTAGACTCTGATATCGATACAGATGAGATTGAGGAA
ATTTGTGGACGTTCGTCGTGGAAGGGGATAATTTGCCAACTTTGGCCTAAGGCGAAATAT
ATTGAGGCAGTTGTCACAGGGTCCATGTCACAATATATACCGGCTTTAGAGTACTATAGT
GAAGGAAAATTGCCTTTAATTTGTACAATGTATGCCTCGTCTGAATGTTACTTTGGTGTC
AATTTGAAACCCTTGAATCCTCCAGATGAGGTGTCTTTCACCCTATTGCCTAATATGGCA
TATTTTGAATTCATACCTTTAGGAGCTAATGGAACTTTCTTAATAGACTTGGACGAAGAA
GAGTTTGTGCCTCAGAGTAAGCTGGTTGACCTGGTCCACGTTAGACTCGGTTATTATTAC
GAGTTGGTGATTACTACATTTTCAGGACTGTATCGGTATCGCATTGGAGATGTGTTGCAA
GTAACTGGATTCCACAATAAAGCCCCTCAATTCAGATTCATTTGCCGAAGAAACGTGGTC
CTCAGCATTGACAATGACAAGACCAACGAGCAAGACCTTCACAGGAGCATAACCCTAGCC
AAGAAACTCCTGGAGCCGCACCAGGCTCTGCTCGTCGAATACACCAGTTACGCTGATGCC
TCCTCCCTACCAGGCCACTACGTCCTCTATTGGGAGATCGTTCACAGCCATTCCATCATC
GACAAAGATGTCAATGTGGAAGCACAAGTGCTTGAAGAGTGTTGCATTGCCATTGAAGAA
CAGCTTGACTACATATACAGGCGATGCCGGACGAATGACAAGTCCGTTGGGCCACTAGAG
ATTCGATTGGTGAAGCCAGGCACTTTTGAAGCGTTAATGGACTTGCTTATAAGTCAAGGT
GGATCTATTAATCAGTACAAAACTCCAAGATGCATTATGTCCAATGAATCTGCATTTGAA
CTTCTGAATTCTACTGTAAAAGCTTCTTATTTTAGCCCAAGGGAACCTTCCTGGAGTGCT
TGA

Peptide Sequence

PEP ID

XP_016485843.1
PEP Infomation

PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 isoform X2 [Nicotiana tabacum]
Sequence

MEKTLILFLLTPSLKCFAGTSGGEPKLMPSIAEDLDRRTFLYNLIMPIMNQYIPGLDEGK
AMFLYFVKAEMSTPCGIPARTVLTSYYKSKHFKCRSKDPYNDFTSPDQAILCYDSNQSMY
CQLLAGLVYRHQVLRIGAVFASALLRAISFLQRNWQNMCHDIRTGQLNAMITDVSCRSSL
SNILSTLNLDSDIDTDEIEEICGRSSWKGIICQLWPKAKYIEAVVTGSMSQYIPALEYYS
EGKLPLICTMYASSECYFGVNLKPLNPPDEVSFTLLPNMAYFEFIPLGANGTFLIDLDEE
EFVPQSKLVDLVHVRLGYYYELVITTFSGLYRYRIGDVLQVTGFHNKAPQFRFICRRNVV
LSIDNDKTNEQDLHRSITLAKKLLEPHQALLVEYTSYADASSLPGHYVLYWEIVHSHSII
DKDVNVEAQVLEECCIAIEEQLDYIYRRCRTNDKSVGPLEIRLVKPGTFEALMDLLISQG
GSINQYKTPRCIMSNESAFELLNSTVKASYFSPREPSWSA

Transcript Sequence

Gene sequence data has not been registered.